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Wednesday 27 March 2013

Mutations and the Human Genone

DNA replicates itself often and very accurately, and there is a checking mechanism in place to help with accuracy.
If a change does happen, we call it a mutation. The rate of change is increased by radiation from the sun’s or other sources’ atomic radiation.
Discuss why most mutations never influence the genome of the population.


Bryony's Response:


DNA replication is very vital to an organism’s survival as it needs to happen for cells to divide. DNA replication is a very complicated process but is also very accurate but sometimes mutations do happen. There are many different types of mutations and many will affect people differently and mutations can be caused by environmental factures such as radiation. But despite all this most mutations do not have an effect on the genome of the human population.   

DNA replication occurs when new cells are created. Before a cell can divide into daughter cells the DNA must be replicated to produce the new chromosomes for the new cells to carry. DNA replication occurs when the body needs to make new cells. DNA replication starts when a cell is preparing to divide. An enzyme called Helicase splits the DNA double helix down the middle separating the two strands of DNA. As the strands unwind an enzyme called gyrase prevents the strands from getting tangled by making temporary nicks in the strands that will be sealed up later. When the two strands are separated several small proteins called single stand binding proteins temporarily bind each side and keep them from re-joining with each other. As the strands unzip the bases become exposed and an enzyme called DNA polymerase III goes down the DNA strands and add new nucleotides to each strand. The nucleotides pair with the complementary nucleotides on the existing strand. But when the double helix is split there is a leading strand and a lagging strand. Because DNA polymerase must move in the 5' to 3' direction on the DNA strand when the enzyme is on the lagging strand the enzyme must move away from the replication fork. The replication fork is the junction point where the strands are being split. If the enzyme moves away from the fork while the fork is uncovering new DNA some DNA will not be replicated. So the lagging strand needs to be replicated in small segments. These fragments are then stitched together by DNA ligase and this creates a full strand of DNA. This shows that DNA replication is a very complicated process that is necessary for cells to divide.
Although DNA replication is extremely accurate sometimes things go wrong and mutations can occur. A mutation is a permanent change in the DNA sequence that makes up a gene. Mutations are caused by DNA replication going wrong.  Every time a human cell divides and its DNA replicates it has to copy and transmit the exact same copy of three billion nucleotides to it daughter cells. Like everything else in the world DNA replication is not always perfect. Sometimes mistakes happen with the polymerase enzymes and they insert the wrong nucleotide or to many or two few nucleotides into a sequence. Fortunately many of these mistakes are fixed by various DNA repair processes and DNA repair enzymes. But some replication errors make it past the repairing enzymes becoming permanent mutations. Mutations can also be caused by environmental factures such as nuclear radiation and ultraviolet light from the sun. Ultraviolet light, nuclear radiation and certain chemicals can damage DNA by altering a nucleotides base so that it seems like another base. So when the DNA replicates the altered base will pair with an incorrect base and cause a mutation. For example an altered guanine base could get pair with a thymine base. This would cause a permanent mutation in the DNA sequence.  Environmental factures especially nuclear radiation can also break the phosphate back bone of DNA that carries a gene. This creates a mutated form of the gene that may produce different proteins. Also cells that have broken DNA will try to fix the broken ends of DNA by joining the loose ends to other pieces of DNA within the cell. This creates a mutation called translocation. If the breakage point is within or near a gene the gene’s function may be altered. This shows how mutations occur and that although they can happen regularly they are not all permanent.    
There are many types of mutations. Mutations can range in size from a single DNA base to a large part of the chromosome. There are three types of mutations germline mutations, de novo mutations and somatic mutations. Germline mutations are present in gametes. This type of mutation is present throughout a person’s life and is in virtually every cell in their body. This type of mutation can be passed down to the next generation and is sometimes called hereditary mutations. De novo mutations only occur in an egg or sperm cell or during fertilization. This mutation well be present throughout the person’s life in very one of their cells but there will be no family history of this mutation. Somatic mutations occur in individual cells at some time during a person’s life. But since these mutations occur in somatic cells which are cells that are not gametes they will not be passed on to other generations. These types of mutations will affect people differently for example a somatic mutation will not be present throughout all of someone’s life unlike a de novo mutation which will be. De novo mutations can be things like mental disorders and birth defects such as heart problems. While a somatic mutation would more likely cause cancer or other diseases. This shows that different types of mutations affect people in different ways. Therefore each mutation can be different and have different effects on someone’s life. But do many mutations affect the overall human population genome.
Most mutations do not affect the genome of the human population because many mutations occur in somatic cells so they don’t get passed on, many mutations occur in noncoding DNA, there are so many humans in the world that one mutation will not really affect the overall genome of the population and if a mutation is extremely bad the person with it will not survive . Mutations that happen in somatic cells will not be passed down to the next generation because they do not occur in gametes so not many humans will carry this mutation because it cannot be inherited. For example a mutation that can be inherited like being left handed will spread throughout the human population more than a mutation that cannot be inherited. Another reason is because about 95% of human DNA is noncoding DNA meaning that it does not code for proteins that are not expressed in the organism’s phenotype. Because a lot of our DNA is noncoding the chances are that mutations will not happen in the coding DNA so they will not have any effect on the person’s genome or the populations. Another reason is because there are simply so many people on the planet that if a mutation occurred in one or two peoples genes it will not make a big difference in the genome of the population because there are millions of people without this mutation and the chances that they will breed with someone with the same mutation is very slim. For example if someone with a mutation breed with someone without the mutation the children may not carry the mutation and the mutation would have to be in the parents gametes to be passed down to the children anyway so the chances of all this happening are very slim. Lastly if a mutation is extremely bad the person carrying it would not be able to survive or would not be able to produce children so the mutation would no get passed on anyway. This shows that many mutations don’t get passed down to other generations that most mutations occur in noncoding DNA and if mutation is really really bad it will not get passed down anyway. Therefore most mutations do not affect the genome of the human population.
Although some mutations to spread through the human population. Mutations that spread through the population are generally mutations in gametes because they can be passed down to other generations. An example of this is not having a hitch hiker’s thumb or being left handed. Both of these mutations can be inherited and have passed through a lot of the population because it’s not extremely odd to find someone who has a straight thumb or who is left handed. So some mutations can affect the human population’s genome. This shows that some mutations can affect the population’s genome but when you think of all the other mutations that will occur in peoples DNA everyday it becomes clear that most mutations must not affect the genome of all the population or the human race would be every mutated and constantly changing characteristic as new mutations occurred.                
To conclude DNA replication is a very accurate process but nothing is perfect and mutations do happen sometimes. Mutations can be caused by environmental factures such as radiation there are many different types of mutation and each type will affect people differently. Most mutation does not affect the genome of the human population because they occur in noncoding DNA and the chances of the being passed on are very thin. I believe that my information is reliable because a lot of it doubled up on different websites and this lead me to believe that the information was correct and the information seemed to be believable. Therefore most mutations do not affect the genome of the human population.

Wednesday 20 March 2013

Selective Breeding and Natural Selection

What is Natural Selection? What is Selective Breeding?  What do they have in common? What is unique about each of them? Are they basically the same thing or not?






Thursday 14 March 2013

MNI 4 President

This blog like, helps you catch up when you've missed out some days of school. It's like the best idea ever! Soooooooo convenient! Mr. Niccol is the man.

Wednesday 13 March 2013

Videos

I find that posting Mr. Nicoll's teachings on the blog to be really helpful. It truly did assist me in my homework and I thank you for that.

Tuesday 12 March 2013

From Wolf to Woof



From Wolf to Woof

All breeds of domestic dog, Canis lupus familiaris, are the same species but exhibit extreme variation. Furthermore, modern genetic analytical techniques have shown that, regardless of the breed, the domestic dog’s ancestor is the gray wolf, Canis lupus. Gray wolves still exist to this day.
DISCUSS the variation in domestic dog populations and in wild gray wolf populations.
In your answer you should:
  • identify some differences between the gray wolf and domestic dog breeds,
  • explain how these differences may have come about, and
  • explain why gray wolves look so similar, while different breeds of domestic dogs look so different.

Emily's Response

The domestic dog is a very interesting species of animal. There is a huge variety of breeds, ranging from the tiny Chihuahua, standing at about 6 inches tall, to the huge Irish Wolfhound, which is taller than the average human while standing on its back legs. But these dogs all have one thing in common; they are all related to Canis lupus, the grey wolf. There has been some debate over whether this is true or not, but modern genetic analytical techniques has helped prove that the domestic dog's DNA is over 99% identical to that of the grey wolf. Even though this has been proven, it does not change the fact that there is so much variation in the domestic dog species, yet there is little variation in the grey wolf species. Why is this? Read on and find out.
Even though the domestic dog and the grey wolf have nearly identical DNA, there are many differences between them: physical, mental and behavioural. These may have come about by mutations from the breeding of brother and sister wolf-dogs. Close inbreeding causes mutations, and many of these would be "bad" mutations, such as heart problems, blindness etc. This would happen because the wolf-dog siblings would share the same DNA, which may cause the insertion, deletion or substitution of the correct genes. But some of the mutations may be desirable, such as a curly tail, and you would continue to breed this wolf-dog to pass this desirable mutation on. Grey wolves look quite similar, while domestic dogs have a huge degree of variation. The wolves look so similar because there is no artificial selection in the wild; there is natural selection, which chooses the fastest, strongest and most intelligent wolves to carry on their genes. Because of this natural selection, there is little inbreeding, so mutations are uncommon. The domestic dog, however, has such variation because of humans. We were the evolutionary force, creating mutations from inbreeding and artificial selection, which led to different sizes, shapes and behaviours.
There are multiple differences between the grey wolf and the domestic dog. One of the most obvious differences between them is their appearance. The colour of the grey wolf’s coat ranges from grey to black to tawny to white. The domestic dog, however, has all kinds of different coat colours: gold, brindle, liver, off white, peppered, balck, tan, brown etc. Another difference between the two species is their behaviour towards humans. An experiment was undertaken by a man named Adam Miklosi, a canine cognition researcher from Hungary. He was trying to prove that a difference in behaviour between wolves and dogs was due to genetic differences, rather than the environment in which they were raised. He and his team took advantage of a unique situation where thirteen wolves were hand-raised and socialised in human homes, exactly the same as dogs. They performed two tests, both of which were unsolvable, and took notes. In the experiments, only 2 of 7 wolves looked back at the human experimenter for help, compared with 5 of 7 dogs. The dogs also looked back earlier than the wolves did, and for a longer duration. Adam Miklosi and his team came to the conclusion that dogs’ social skills were encoded in their genes (a genetic predisposition). This shows that the grey wolf has no interest in humans, whereas the domestic dog does, and that this is a genetic difference, caused by artificial selection by humans.
A point of view that opposes my own would be one of Charles Darwin’s. He thought that because there is such diversity between dog breeds, there were multiple sources where DNA could have come from. Animals in the Canidae family (a group with wolf-like canids) would be where the DNA would have come from if Darwin’s theory was correct. This means the DNA could have come from wolf, coyote or jackal.
Darwin’s theory is wrong because it has been proven that dog and wolf are almost identical genetically. DNA tests have been run and have come to the conclusion that the domestic dog and the wolf have less than 1% difference in DNA, whereas the DNA difference between the wolf and the coyote is 4%. This means that the domestic dog did indeed come from the grey wolf.
Over 15,000 years ago, there was no such thing as the domestic dog, but after a long process of artificial selection and inbreeding, it has been created. It is hard to believe that over 400 breeds of dog are related to only one animal: the grey wolf. There are many differences between the two animals, but there is no denying that they share nearly identical DNA.

Lizzie's Response

A difference between the gray wolf and the domestic dog are that gray wolves are wild animals which evolved through the process of natural selection, whereas domestic dogs were selectively bred by humans for specific traits. (Humans have an affinity for achieving their idea of ‘perfection’. If they liked the look of a wolf with smaller ears instead of larger, they would choose to domesticate that wolf, and would want its pups to look the same as it.)This difference would not exist without people.
Another difference is the personality and attitude towards people that they have, but there is a lot of debate over whether this is genetic or learnt, because young wolf cubs can easily be brought up to behave exactly like dogs, but once they are a month old, efforts to domesticate them completely are usually fruitless. Once again, this is a difference that revolves around people.
Wolves and dogs look very different as dogs have adapted to (or been adapted to, through the interference of people) different environments and ways of living. The wolves, who didn’t have human transport as a means of travel, weren’t able to cross oceans to get to new places. However, many breeds of dog are genetically close enough to wolves that they are able to breed and produce fertile offspring. This means that they are more compatible than horses and donkeys, or tigers and lions.
Gray wolves look so similar to each other because they have adapted to one environment. Although some circumstances have created sub-breeds (for example, when the wolf population dipped, wolves bred with coyotes, creating the red wolf.) Despite this, gray wolves still exist, because they are good at living where they do. They have long legs to overcome the deep snow that covers most of their habitat, and they are good at retaining body heat. This doesn’t need to change. If a wolf was born with a mutation, for example having short fur, there is a strong chance it wouldn’t survive. Dogs look so different from each other because humans have isolated them from each other by taking them to different places in the world, and because different people like different things as far as pet dogs go, pet dogs bred in Mexico would look completely different to pet dogs in China, not to mention that they had completely different environments to adapt to.

From Wolf to Woof

Mendelian Genetics Overview


Monday 11 March 2013

Tasks in class

I am really enjoying having time to do these assignments as it gives us longer to process what we are researching and also gives us time to go back over our work and complete other activities in our workbooks.  I also enjoy it being open tasks so you can choose if you feed off others ideas or find your own information. :)

Thursday 7 March 2013

Opinion

I am enjoying having one project per week as I feel that it is good to do one project really well, instead of completing lots at an average standard.

But that's just me
Gregory Mendel
Was an Austrian monk who investigated the inheritance patterns, with peas. He established three important laws of genetics; law of segregation, law of independence and law of dominance. His work wasn't notice until 16 years after his death, by three German scientists. Overall, he was revolutionary in establishing the way in which the physical characteristics of organisms can be inherited from there parents. He was one of the earliest people to research in the field of genetics. He discovered allele, and how they work.  

Wednesday 6 March 2013

hmm

Probably my favourite class right now... Great fun

New Toys


this weeks class work 6/03/13


11 Science
How did the work of Gregor Mendel lead to our current understanding of genetics

-Genes                 -Genotype
-Alleles                 -Dominant
-Phenotype        -Locus
Recessive

Mattews: pg37-48
Science Point: pg12-13,15,21-42

Tuesday 5 March 2013

DNA Song

Here is the long awaited song. Well done to everyone involved